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Archiver > GENEALOGY-DNA > 2007-08 > 1186235853


From: "Dora Smith" <>
Subject: Re: [DNA] mtDNA H2a phylogeny
Date: Sat, 4 Aug 2007 08:57:33 -0500
References: <c0c.1cd09355.33e543ae@aol.com>


Kathy, I'm getting sequence ID not found. I entered put A4025540 in the box
where it says to enter accession number, I chose Nucleotide Collection
(nr/nt) on the drop down box, and I even tried selecting human genomic
instead of other.

Yours,
Dora Smith
Austin, TX


----- Original Message -----
From: <>
To: <>
Sent: Friday, August 03, 2007 9:51 PM
Subject: Re: [DNA] mtDNA H2a phylogeny


>
> Go to:
> _http://www.ncbi.nlm.nih.gov/BLAST/_ (http://www.ncbi.nlm.nih.gov/BLAST/)
> Choose Nucleotide Blast
> Enter Accession number A4025540
> Nucleotide collection (nr/nt)
>
> The matching H2a2 FGS sequence will have the alignment
> off by one number from the CRS. All the SCOT
> sequences are from Helgason's paper but will only
> report the HVR1 results so the coding region
> suspected 3388 polymorphism will not be present.
> I am assuming these would fit into H2a2 today
> because four markers would not occur together
> like this by chance alone:
> 16235 + 16291 + 16293 + 16400
>
> It takes a lot of detective work to find the connections.
>
> Kathy J.
>


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