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From: "Ian Logan" <>
Subject: Re: [DNA] Are these SNP's tested by deCodeMe ?
Date: Sun, 6 Jan 2008 15:23:46 -0000
References: <d61.1b5186d1.34b217f6@aol.com>


Ann/List

Interesting ... however rs2185539 doesn't seem very helpful - which is a pity.

But at least you now know the background to another SNP; and being found
in a NUMT does at least show this SNP will be medically unimportant.

Perhaps you would care to try looking at 21 more SNPs from a couple
of NUMTs on Chromosome 5 ?

Ian

www.ianlogan.co.uk

............
NUMT chr5:79981597..79983766
NT_006713.14 30542368-30540199 mtDNA 523-2699

rs836818 chr5:79983712 C/T
.................

NUMT chr5:99409541..99418335
NT_034772.5 1805449-1796655 mtDNA 6395-15184

In base order:
rs2370424 chr5:99410008 G/T
rs17164397 chr5:99411368 C/T
rs17696519 chr5:99411485 C/T
rs17164399 chr5:99411952 A/C
rs17164401 chr5:99412151 A/C
rs10515293 chr5:99414416 A/T
rs10515294 chr5:99414965 A/G
rs10515295 chr5:99415259 C/T
rs17164416 chr5:99415346 A/G
rs17164420 chr5:99415725 C/T

rs17164421 chr5:99415726 A/G
rs12187467 chr5:99416169 C/G
rs17164419 chr5:99415557 A/G
rs11241384 chr5:99416069 A/G
rs17764255 chr5:99416422 A/G
rs2045848 chr5:99416819 C/T(-)
rs17707689 chr5:99416702 C/T
rs1531487 chr5:99417401 C/G(-)
rs2045846 chr5:99417920 A/G(-)
rs2045845 chr5:99418041 C/T(-)

Repeated in numerical order
rs1531487 chr5:99417401 C/G(-)
rs2045845 chr5:99418041 C/T(-)
rs2045846 chr5:99417920 A/G(-)
rs2045848 chr5:99416819 C/T(-)
rs2370424 chr5:99410008 G/T
rs10515293 chr5:99414416 A/T
rs10515294 chr5:99414965 A/G
rs10515295 chr5:99415259 C/T
rs11241384 chr5:99416069 A/G
rs12187467 chr5:99416169 C/G

rs17164397 chr5:99411368 C/T
rs17164399 chr5:99411952 A/C
rs17164401 chr5:99412151 A/C
rs17164416 chr5:99415346 A/G
rs17164419 chr5:99415557 A/G
rs17164420 chr5:99415725 C/T
rs17164421 chr5:99415726 A/G
rs17696519 chr5:99411485 C/T
rs17707689 chr5:99416702 C/T
rs17764255 chr5:99416422 A/G
.........

Ann wrote
The only one is rs2185539, found on the Human1m set used by deCODEme, but not
the 550K set used by 23andMe.
............

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