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From:
Subject: Re: [DNA] News item: first ancient human genome sequenced [mtDNA =D2a1]
Date: Thu, 11 Feb 2010 11:04:36 EST


In a message dated 2/11/2010 6:41:41 AM Pacific Standard Time,
writes:

> The genome is available to browse and download.
>
> http://www.cbs.dtu.dk/cgi-bin/saqqaq.cgi

Thanks for this! I downloaded the mtDNA results in FASTA format and used
mtPhyl to extract the list of differences. Some segments were missing

1088..1214
4174..4385
5218..5644
7386..7451
8273..8335
8790..8875

but there were enough SNPs to assign haplogroup D2a1. Here's the list. Note
that D2 is a subset of D4, illogical as that may seem. See
http://phylotree.org for details.

73G not HV
263G not CRS
309+C common
315+C common
489C M
750G not CRS
1438G not CRS
2706G not H
3010A D4
3316A D4e'1
4769G not CRS
4883T D
5178A D
7028T not H
7493T D2
8414T D4
8701G not N
8703T D2
9536T D4e1'3
9540C not N
9667G D2a1
10398G not N
10400T M
10873C not N
11215T D4e
11719A not HV
11959G D2a1
12705T not R
14226A D4e
14668T D4
14766T not HV
14783C M
15043A M
15301A not N
15326G not CRS
16092C private
16129A D2
16188+C common
16223T not HV
16271C D2
16362C D
16569-G

Ann Turner


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