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Archiver > GENEALOGY-DNA > 2010-02 > 1265905714


From: Vincent Vizachero <>
Subject: Re: [DNA] News item: first ancient human genome sequenced [mtDNA =D2a1]
Date: Thu, 11 Feb 2010 11:29:16 -0500
References: <7163.746037b7.38a58494@aol.com>
In-Reply-To: <7163.746037b7.38a58494@aol.com>


That's consistent with previous findings on the same sample.

http://www.sciencemag.org/cgi/content/abstract/1159750

VV




On Feb 11, 2010, at 11:04 AM, wrote:

> In a message dated 2/11/2010 6:41:41 AM Pacific Standard Time,
> writes:
>
>> The genome is available to browse and download.
>>
>> http://www.cbs.dtu.dk/cgi-bin/saqqaq.cgi
>
> Thanks for this! I downloaded the mtDNA results in FASTA format and
> used
> mtPhyl to extract the list of differences. Some segments were missing
>
> 1088..1214
> 4174..4385
> 5218..5644
> 7386..7451
> 8273..8335
> 8790..8875
>
> but there were enough SNPs to assign haplogroup D2a1. Here's the
> list. Note
> that D2 is a subset of D4, illogical as that may seem. See
> http://phylotree.org for details.
>
> 73G not HV
> 263G not CRS
> 309+C common
> 315+C common
> 489C M
> 750G not CRS
> 1438G not CRS
> 2706G not H
> 3010A D4
> 3316A D4e'1
> 4769G not CRS
> 4883T D
> 5178A D
> 7028T not H
> 7493T D2
> 8414T D4
> 8701G not N
> 8703T D2
> 9536T D4e1'3
> 9540C not N
> 9667G D2a1
> 10398G not N
> 10400T M
> 10873C not N
> 11215T D4e
> 11719A not HV
> 11959G D2a1
> 12705T not R
> 14226A D4e
> 14668T D4
> 14766T not HV
> 14783C M
> 15043A M
> 15301A not N
> 15326G not CRS
> 16092C private
> 16129A D2
> 16188+C common
> 16223T not HV
> 16271C D2
> 16362C D
> 16569-G
>
> Ann Turner
>
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