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Archiver > GENEALOGY-DNA > 2010-03 > 1269951982


From: vernade didier <>
Subject: [DNA] Re : Homo sp. Altai complete mitochondrial genome sequencefromDenisova, Altai Russia
Date: Tue, 30 Mar 2010 12:32:08 +0000 (GMT)
In-Reply-To: <CD14C2829AF14455A52B28374099124C@IanPC>


The mutation count in the article is 387 not 398 as here .

Didier


> List:
> I sent this yesterday - but it has not appeared on the list
> - Is there a problem ?
> I'll try again.
> --------------------------------------------------
>
> List
>
> This is my very first try ! 
>
> But I am sure it will not be the final list !
>
> ( . for deletions,  .C etc. for insertions)
>
> Test - Cambridge         
> and  - FN673705(Altai)   
>    
>
> A73G   
> C150T   C151T   T152C   A189G   T195A   196.C   G247.   T252C   A263G   
> T282C   A291.   C299.   C309.   315.C   315.C   C340T   A385G   C456T   C486T   
> C505T   C522.   A523.   C534T   C575T   T596C   G709A   C736A   T825A   A827G   
> C868T   A928G   C1009T 
> G1018A  C1048T  G1393A  C1405T 
> G1442A  T1673C  G1709A 
> G1719A  A1761T  G1888A  G2056A 
> C2284T  A2402G  T2404C  C2523T 
> G2758A  G2831C 
> T2885C  T2955C  G3277A  T3290C 
> G3357A  G3421A  G3496T  T3504A 
> G3591A  C3594T 
> C3636T  A3714G  C3747T  T3753C 
> C3764T  A3816G  C3832T  G3834A 
> C3870T  C3888T 
> C3909T  A3957G  C3978T  T4047C 
> G4048A  G4092A  A4104G  C4312T 
> C4318T  C4456T 
> A4562G  T4586C  T4622C  G4659A 
> A4769G  T4856C  C4904T  C4914T 
> T4928C  T4937C 
> C4940T  A4956G  A4958G  G4959A 
> G4991A  T5021C  G5147A  C5270T 
> A5351G  A5381G 
> C5387T  C5447T  G5471A  A5474G 
> T5508C  A5516G  A5539G  T5580C 
> A5600G  G5821A 
> C5840T  5894.A  5894.A  5899.C 
> 5899.C  5899.C  5899.C  G6023A 
> A6040G  G6150A 
> T6152C  T6221C  C6242T  A6266C 
> T6351C  G6366A  C6452T  C6483T 
> A6485G  A6509G 
> T6512C  A6530G  C6542T  C6566T 
> C6569A  T6641C  T6719C  G6917A 
> C6935T  C6938T 
> T6956G  C7028T  A7076G  A7146G 
> C7232T  C7256T  T7270C  G7316A 
> G7337A  A7403G 
> A7474G  G7521A  T7609C  T7621C 
> C7650T  G7664A  T7705C  T7741C 
> G7789A  C7810T 
> C7868T  C7891T  T7961C  A8008G 
> A8021G  G8065A  C8140T  G8152A 
> T8167C  C8203T 
> C8406T  C8455T  C8461T  C8488T 
> T8503C  A8521G  G8545A  C8655T 
> A8677C  A8701G 
> A8718G  T8772C  A8784G  A8860G 
> C8943T  G8994A  C9060A  C9075T 
> A9080G  C9168T 
> A9254G  G9300A  T9325C  G9329C 
> G9380A  A9434G  C9449T  C9527T 
> T9530C  C9536T 
> T9540C  C9566T  A9629G  T9647C 
> T9716C  G9755A  T9758C  T9797C 
> C9839A  C9869T 
> C9884T  T9899C  G9932A  G9966A  C10088T
> T10101C G10172A C10196T C10223T T10238C
> C10307T T10324C A10385G A10398G C10547T G10586A C10670T
> G10688A T10742C A10750G
> T10810C T10873C A10876G T10909C T10915C C10930T T10966G
> G11016A A11065G C11071T
> T11075C T11147C C11215T C11270T A11314G C11503T C11549T
> A11551G A11590G G11719A
> T11770C T11864C G11914A C11983T A12001G G12007A C12064T
> T12189C A12193T C12238T
> T12311C C12346T G12372A T12375C G12406A A12420G C12474T
> T12477C G12528A G12561A
> G12630A A12654G G12684A A12699G C12705T T12714C G12756A
> C12801T A12810G T12879C
> A12921G T13020C A13062G T13095C A13104G A13105G A13269G
> A13276G A13350G G13359A
> G13368A A13434G T13437C T13488C C13506T A13528G A13629G
> T13635C C13650T T13656C
> C13680T T13819C A13827G T13879C G13889A T13896C C13923T
> G13928A G13968A A14007G
> T14020C T14034C A14053G C14073T T14088C C14194T A14230G
> A14296G G14305A T14311C
> A14409G G14476A T14494C G14560A G14569A A14605G A14662G
> A14693G T14757C C14766T
> C14800T A14839G G14869A C14950T A14954G T14956C T14971C
> G15043A C15100T G15110A
> G15148A G15172C T15191C A15244G C15250T A15326G G15355A
> A15358G C15403T C15443T
> C15490T A15562G C15643T A15649G C15667T C15742T C15778T
> C15857T G15883A T15941C
> A16070G A16081G G16129A C16134T C16148T C16169T A16171C
> T16172C A16182. A16183.
> C16187T C16188T T16189C 16193.C T16209C G16213A T16243C
> C16245T T16249C C16259A
> C16266T G16274A C16278T C16294T T16304C T16311C A16317C
> C16320T C16355T T16356C
> T16362C T16368C G16391A A16399G A16487G A16497G T16519C
> C16527T

>
> Mutation Count = 398
> Calculated MRCA = 597000 YBP   (Just my
> first very rough suggestion)
>
> And, the list of tRNA mutations ....
>
> 1. Phe.. T596C   
> 2. Val..
> 3. Leu(UUR)..G3277A  T3290C 
> 4. Ile.. C4312T  C4318T 
> 5. Gln..
> 6. Met.. C4456T 
> 7. Trp.. A5516G  A5539G 
> 8. Ala.. A5600G 
> 9. Asn..
> 10. Cys.. G5821A 
> 11. Tyr.. C5840T 
> 12. Ser(UCN).. A7474G 
> 13. Asp.. G7521A 
> 14. Lys..
> 15. Gly..
> 16. Arg..
> 17. His.. T12189C A12193T
> 18. Ser(AGY).. C12238T
> 19. Leu(CUN).. T12311C
> 20. Glu.. A14693G
> 21. Thr.. T15941C
> 22. Pro..
>
> Ian
>
>
> --------------------------------------------------
> List
>
> The mtDNA sequence for the new Homo sp. is now on GenBank
>
> The direct link is:
>
> http://www.ncbi.nlm.nih.gov/nuccore/291622149
>
> The Accession Number is FN673705 (not FM....).
>
> By the way:  I am surprised nobody has mentioned that
> the chart at:
>
> www.phylotree.org
>
> was updated at the end of last week.
>
> Ian
>
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